Ccp4 molrep manual

Exercise 1 is an introduction to the MR programs in CCP4 and to the CCP4I interface. Exercise 4 uses Molrep and requires some bookkeeping, but is a useful step-by-step procedure and will allow you to see changes in the maps as the structure solution progresses. molrep_www.doorway.ru formatted CIFile of molrep solution (plus from model_2) with Fobs, Fcalc, Phcalc (this files will be created if your model is EM or density in CCP4 format). www.doorway.ru additional protocol (like log file in CCP4). This file will be created if keyword DOC is 'Y' or 'A'. molrep_www.doorway.ru CCP4 Manual. The CCP4 manual gives an overview of the CCP4 suite in the context of the structure determination process. Its content is distinct from the program documentation, and while it is becoming increasingly out-of-date it still contains useful background material.

MOLREP (CCP4: Supported Program) NAME molrep - automated program for molecular replacement SYNOPSIS. molrep [HKLIN www.doorway.ru] [MAPIN EM_www.doorway.ru4] [MODEL www.doorway.ru (or EM_mod_www.doorway.ru4)] [MODEL2 www.doorway.ru] [PATH_OUT path_out] [PATH_SCR path_scr] [Keyworded input] DESCRIPTION Version // Features; References; Installation and Downloads (source code, binaries,tutorials). Programs like PHASER will do this for you, but you might need to use the CCP4 program REINDEX for other programs (AMORE, MOLREP). P2 1 2 1 2 1 is the commonest space group, but it's a big mistake to assume that your structure is inevitably that space group - I've had many examples where unusual or "rare" space groups prove to be the correct one. Molrep default protocol 06/11/ KEK-CCP4 Workshop 22 •model correction if sequence provided •defines the number of molecules per AU •modification of the model surface •anisotropic correction of the data •weighting the data according to model completeness and similarity •check for pseudotranslation and use it if present.

UsingMolrepforfittingintotheelectrondensity This tutorial demonstrates how to use Phased Translation Function (PTF), Spherically Averaged Phased Translation Function (SAPTF) and Phased Rotation Function (PRF) implemented in Molrep for fitting a model into the electron density maps. The X-ray data used in this tutorial are from the. CCP4 Manual. The CCP4 manual gives an overview of the CCP4 suite in the context of the structure determination process. Its content is distinct from the program documentation, and while it is becoming increasingly out-of-date it still contains useful background material. Copies of the manual can be downloaded here. Exercise 1 is an introduction to the MR programs in CCP4 and to the CCP4I interface. Exercise 4 uses Molrep and requires some bookkeeping, but is a useful step-by-step procedure and will allow you to see changes in the maps as the structure solution progresses.